Stud.IP Uni Oldenburg
University of Oldenburg
04.12.2022 17:11:03
mar570 - Profile Module Introduction to DNA-sequencing and sequence analysis (Complete module description)
Original version English PDF Download
Module label Profile Module Introduction to DNA-sequencing and sequence analysis
Modulkürzel mar570
Credit points 6.0 KP
Workload 180 h
Institute directory Institute for Chemistry and Biology of the Marine Environment
Verwendbarkeit des Moduls
  • Master's Programme Microbiology (Master) > Mastermodule
Zuständige Personen
Brinkhoff, Thorsten Henning (Module responsibility)
Dlugosch, Leon (Module counselling)
Prerequisites
Lecture during the course
Skills to be acquired in this module
The students know how to - sequence DNA by Sanger sequencing - assemble DNA sequences - use internet databases for sequence comparison - use the various facilities of the NCBI database - analyze bacterial genomes for presence of specific genes - use Genious for genome analysis - use ARB, databases and literature data to create - phylogenetic trees - design primers and probes - present and discuss scientific results - write a scientific protocol
Module contents
“Introduction into DNA-sequencing and sequence analysis”: The course starts with a lecture on the first two days. During the following days the participants will give seminar talks about different scientific studies for which DNA sequencing was highly relevant. DNA sequencing will be taught in the lab of the working group. Sequence analysis, introduction into the use of various internet databases, the sequence analysis program Genious and the phylogeny program ARB will be demonstrated by individual use of laptops of the institute.
Literaturempfehlungen
Links
Language of instruction English
Duration (semesters) 1 Semester
Module frequency jährlich
Module capacity unlimited
Modullevel / module level
Modulart / typ of module Wahlpflicht / Elective
Lehr-/Lernform / Teaching/Learning method Seminar (1 SPPW); practical course (4 SPPW)
Vorkenntnisse / Previous knowledge Lecture during the course
Form of instruction Comment SWS Frequency Workload of compulsory attendance
Seminar 1 14
Practical training 4 56
Präsenzzeit Modul insgesamt 70 h
Examination Prüfungszeiten Type of examination
Final exam of module
Announced during the course.
One assessment of examination: Portfolio (seminar presentation, written protocol) Protocol (75 %), seminar presentation (25 %). Active participation (active and documented participation in practical courses (labs, exercises, seminars, field trips) and courses. These include e.g. the delivery of exercises, writing a lab report or seminar presentations according to the advice of the course supervisor.)