Stud.IP Uni Oldenburg
University of Oldenburg
07.12.2021 19:29:42
mar454 - Introduction to DNA Sequencing and Sequence Analysis (Complete module description)
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Module label Introduction to DNA Sequencing and Sequence Analysis
Module code mar454
Credit points 6.0 KP
Workload 180 h
(
Präsenzzeit: 84 Stunden, Selbststudium: 96 Stunden
)
Institute directory Institute for Chemistry and Biology of the Marine Environment
Applicability of the module
  • Master's Programme Marine Environmental Sciences (Master) > Mastermodule
Responsible persons
Brinkhoff, Thorsten Henning (Module responsibility)
Moraru, Liliana Cristina (Module counselling)
Prerequisites
Keine
Skills to be acquired in this module

The students know how to

- sequence DNA by Sanger sequencing

- assemble DNA sequences

- use internet databases for sequence comparison

- use the various facilities of the NCBI database

- analyze bacterial genomes for presence of specific     

  Genes

- use Genious for genome analysis

- use ARB, databases and literature data

- create phylogenetic trees

- design primers and probes

- present and discuss scientific results

- write a scientific protocol  

 

Module contents

Einführung in die Sequenzierung und Sequenzanalyse

The course starts with a lecture on the first two days. During the following days the participants will give seminar talks about different scientific studies for which DNA sequencing was highly relevant. DNA sequencing will be taught in the lab of the working group. Sequence analysis, introduction into the use of various internet databases, the sequence analysis program Genious and the phylogeny program ARB will be demonstrated by individual use of laptops of the institute.

 

Reader's advisory
Will be announced
Links
Languages of instruction German, English
Duration (semesters) 1 Semester
Module frequency
Module capacity 12 (
Verfahren siehe StudIP
)
Modullevel / module level MM (Mastermodul / Master module)
Modulart / typ of module Wahlpflicht / Elective
Lehr-/Lernform / Teaching/Learning method Sommersemester:

Blockveranstaltung
PR/SE Einführung in die Sequenzierung und Sequenzanalyse (4 SWS, 6 KP)
(Introduction into DNA-sequencing and sequence analysis)
Vorkenntnisse / Previous knowledge
Course type Comment SWS Frequency Workload of compulsory attendance
Seminar
2 SuSe 28
Practical training
2 SuSe 28
Total time of attendance for the module 56 h
Examination Time of examination Type of examination
Final exam of module

Wird in den Veranstaltungen zu Beginn durch den Dozenten/die Dozentin bekannt gegeben.

KL