mar570 - Profile Module Introduction to DNA-sequencing and sequence analysis (Veranstaltungsübersicht)

Announced during the course.

One assessment of examination:
Portfolio: Protocol (75 %), seminar presentation (25 %)

Active participation: Active and documented participation in practical courses (labs, exercises, seminars, field trips) and courses. These include e.g. the delivery of exercises, writing a lab report or seminar presentations according to the advice of the course supervisor.
 

The students know how to

- manually assemble 16S rRNA gene sequences

- assemble metagenomic data

- use internet databases for sequence comparison

- use the various facilities of the NCBI database

- analyze bacterial genomes for presence of specific genes

- use ARB, databases and literature data

- create phylogenetic trees

- design primers and probes

- use basic BASH 

- use basic High-performance computers

- use basic R data visualization

- present and discuss scientific results